Category: biology

Hypersensitive Conspiracy Disorder

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I was once cornered in a bar in Suva, Fiji by an Indian man who wanted to unburden himself and complain a bit. He was convinced that the United States had orchestrated the coups of 1987 in which the ethnically Fijian-dominated military took control of the country. The theory went like this: ethnic Indians had too much power for the Americans to bear as we were losing Subic Bay as a deep water naval base in the South Pacific. Suva was the best, nearest alternative but the Indians, with their cultural and political ties to New Delhi, were too socialist for the Americans. Hence the easy solution was to replace the elected government with a more pro-American authoritarian regime. Yet another Cold War dirty tricks effort, like Mossaddegh or Allende, far enough away that the American people just shrugged our collective shoulders. My drinking friend’s core evidence was an alleged sighting of Oliver North by someone, sometime, chatting with government officials. Ollie was the 4D chess grandmaster of the late 80s.

It didn’t work out that way, of course, and the coups continued into the 2000s. More amazing still was that the Berlin Wall came down within weeks of that bar meetup and the entire engagement model for world orders slid into a brief decade of deconstruction and confusion. Even the economic dominance of Japan ebbed and dissipated around the same time.

But our collective penchant for conspiracy theories never waned. And with the growth of the internet and then social media, the speed and ease of disseminating fringe and conspiratorial ideas has only increased. In the past week there were a number of news articles about the role of conspiracy theories, from a so-called “QAnon” advocate meeting with Trump to manipulation of the government by Israel’s Black Cube group.… Read the rest

The Retiring Mind, Part IV: Phenology

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An unexpectedly quick move to Northern Arizona thrust my wife and me into fire and monsoon seasons. The latter term is debatable: monsoons typically involved a radical shift in winds in Southeast Asia. Here the westerlies keep a steady rhythm though the year. The U.S. desert southwest has also adopted the Arabic term “haboob” in recent decades to refer to massive dust storms. If there is a pattern to loanword adoption, it might be a matter of economy. Where a single, unique term can take the place of an elongated description, the loanword wins, even if the nuances of the original get discarded. This continues our child language acquisition tendencies to view different words as being, well, different, even if a strong claim of “one word per meaning” is likely unjustified. We search for replacement terms that provide economy and even relish in the inside knowledge brought by the new lexical entry.

So, as afternoon breaks out into short, heavy downpours we dart in and out of hardware stores getting electrical fishing poles, screw anchors, and #10 8/32nd microbolts to rectify an installation difficulty with a ceiling fan. We meet with contractors and painters who rush through the intermittent squalls. And we break all this up with exploring new restaurants and hitting the local galleries, debating the subterfuge of this or that sculptor in undermining expectations about contemporary trends in southwestern art.

But there is a stability to the forest and canyon around our new house. Deer wander through, but less so as the rain has filled the red rock canyons with watering holes, allowing them to avoid long sojourns to Oak Creek for water. A bobcat nestled for half a morning on our lower deck overlooking the canyon, quietly scanning for prey.… Read the rest

Fantastical Places and the Ethics of Architecture

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Lemuria was a hypothetical answer to the problem of lemurs in Madagascar and India. It was a connective tissue for the naturalism observed during the formative years of naturalism itself. Only a few years had passed since Darwin’s Origin of the Species came out and the patterns of observations that drove Darwin’s daring hypothesis were resonating throughout the European intellectual landscape. Years later, the Pangaea supercontinent would replace the temporary placeholder of Lemuria and the concept would be relegated to mythologized abstractions alongside Atlantis and, well, Hyperborea.

I’m in Lemuria right now, but it is a different fantastical place. In this case, I’m in the Lemuria Earthship Biotecture near Taos, New Mexico. I rented it out on a whim. I needed to travel to Colorado to drop off some birthday cards for our son and thought I might come by and observe this ongoing architectural experiment that I’ve been tracking for decades but never visited. I was surprised to find that I could rent a unit.

First, though, you have to get here, which involves crossing the Rio Grande Gorge:

Once I arrived, I encountered throngs of tourists, including an extended Finnish family that I had to eavesdrop on to guess the language they were speaking. The Earthship project has a long history, but it is always a history of trying to create sustainable, off-the-grid structures that maximize the use of disposable aspects of our society. So the walls are tires filled with dirt or cut wine bottles embedded in cement. Photovoltaics charge batteries and gray water (shower and washing water) is reused to flush toilets and grow food plants. Black water (toilet water) flows into leachfields that support landscape plants.… Read the rest

Less Dead

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I’m feeling less dead than I could be. Here’s the rattlesnake that struck and bounced off my running shoe this morning:

He started rattling after the initial strike, which seems like an evolutionary spandrel. At least he didn’t have a machine gun. I’ve named him Bartholomew and wish him the best on his future journeys. And here is the juvenile oryx who was laughing at the situation nearby:

… Read the rest

Zebras with Machine Guns

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I was just rereading some of the literature on Plantinga’s Evolutionary Argument Against Naturalism (EAAN) as a distraction from trying to write too much on ¡Reconquista!, since it looks like I am on a much faster trajectory to finishing the book than I had thought. EAAN is a curious little argument that some have dismissed as a resurgent example of scholastic theology. It has some newer trappings that we see in modern historical method, however, especially in the use Bayes’ Theorem to establish the warrant of beliefs by trying to cast those warrants as probabilities.

A critical part of Plantinga’s argument hinges on the notion that evolutionary processes optimize against behavior and not necessarily belief. Therefore, it is plausible that an individual could hold false beliefs that are nonetheless adaptive. For instance, Plantinga gives the example of a man who desires to be eaten by tigers but always feels hopeless when confronted by a given tiger because he doesn’t feel worthy of that particular tiger, so he runs away and looks for another one. This may seem like a strange conjunction of beliefs and actions that happen to result in the man surviving, but we know from modern psychology that people can form elaborate justifications for perceived events and wild metaphysics to coordinate those justifications.

If that is the case, for Plantinga, the evolutionary consequence is that we should not trust our belief in our reasoning faculties because they are effectively arbitrary. There are dozens of responses to this argument that dissect it from many different dimensions. I’ve previously showcased Branden Fitelson and Elliot Sober’s Plantinga’s Probability Arguments Against Evolutionary Naturalism from 1997, which I think is one of the most complete examinations of the structure of the argument.… Read the rest

The Obsessive Dreyfus-Hawking Conundrum

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I’ve been obsessed lately. I was up at 5 A.M. yesterday and drove to Ruidoso to do some hiking (trails T93 to T92, if interested). The San Augustin Pass was desolate as the sun began breaking over, so I inched up into triple digit speeds in the M6. Because that is what the machine is made for. Booming across White Sands Missile Range, I recalled watching base police work with National Park Rangers to chase oryx down the highway while early F117s practiced touch-and-gos at Holloman in the background, and then driving my carpool truck out to the high energy laser site or desert ship to deliver documents.

I settled into Starbucks an hour and a half later and started writing on ¡Reconquista!, cranking out thousands of words before trying to track down the trailhead and starting on my hike. (I would have run the thing but wanted to go to lunch later and didn’t have access to a shower. Neither restaurant nor diners deserve an après-run moi.) And then I was on the trail and I kept stopping and taking plot and dialogue notes, revisiting little vignettes and annotating enhancements that I would later salt in to the main text over lunch. And I kept rummaging through the development of characters, refining and sifting the facts of their lives through different sets of sieves until they took on both a greater valence within the story arc and, often, more comedic value.

I was obsessed and remain so. It is a joyous thing to be in this state, comparable only to working on large-scale software systems when the hours melt away and meals slip as one cranks through problem after problem, building and modulating the subsystems until the units begin to sing together like a chorus.… Read the rest

Tweak, Memory

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Artificial Neural Networks (ANNs) were, from early on in their formulation as Threshold Logic Units (TLUs) or Perceptrons, mostly focused on non-sequential decision-making tasks. With the invention of back-propagation training methods, the application to static presentations of data became somewhat fixed as a methodology. During the 90s Support Vector Machines became the rage and then Random Forests and other ensemble approaches held significant mindshare. ANNs receded into the distance as a quaint, historical approach that was fairly computationally expensive and opaque when compared to the other methods.

But Deep Learning has brought the ANN back through a combination of improvements, both minor and major. The most important enhancements include pre-training of the networks as auto-encoders prior to pursuing error-based training using back-propagation or  Contrastive Divergence with Gibbs Sampling. The critical other enhancement derives from Schmidhuber and others work in the 90s on managing temporal presentations to ANNs so the can effectively process sequences of signals. This latter development is critical for processing speech, written language, grammar, changes in video state, etc. Back-propagation without some form of recurrent network structure or memory management washes out the error signal that is needed for adjusting the weights of the networks. And it should be noted that increased compute fire-power using GPUs and custom chips has accelerated training performance enough that experimental cycles are within the range of doable.

Note that these are what might be called “computer science” issues rather than “brain science” issues. Researchers are drawing rough analogies between some observed properties of real neuronal systems (neurons fire and connect together) but then are pursuing a more abstract question as to how a very simple computational model of such neural networks can learn.… Read the rest

Traitorous Reason, Facts, and Analysis

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dinoObama’s post-election press conference was notable for its continued demonstration of adult discourse and values. Especially notable:

This office is bigger than any one person and that’s why ensuring a smooth transition is so important. It’s not something that the constitution explicitly requires but it is one of those norms that are vital to a functioning democracy, similar to norms of civility and tolerance and a commitment to reason and facts and analysis.

But ideology in American politics (and elsewhere) has the traitorous habit of undermining every one of those norms. It always begins with undermining the facts in pursuit of manipulation. Just before the election, the wizardly Aron Ra took to YouTube to review VP-elect Mike Pence’s bizarre grandstanding in Congress in 2002:

And just today, Trump lashed out at the cast of Hamilton for lecturing Mike Pence on his anti-LGBTQ stands, also related to ideology and belief, at the end of a show.

Astonishing as this seems, we live in an imperfect world being drawn very slowly away from tribal and xenophobic tendencies, and in fits and starts. My wife received a copy of letter from now-deceased family that contained an editorial from the Shreveport Journal in the 1960s that (with its embedded The Worker editorial review) simultaneously attacked segregationist violence, the rhetoric of Alabama governor George Wallace, claimed that communists were influencing John F. Kennedy and the civil rights movement, demanded the jailing of communists, and suggested the federal government should take over Alabama:

editorial-shreveport-60s-m

The accompanying letter was also concerned over the fate of children raised as Unitarians, amazingly enough, and how they could possibly be moral people. It then concluded with a recommendation to vote for Goldwater.… Read the rest

Motivation, Boredom, and Problem Solving

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shatteredIn the New York Times Stone column, James Blachowicz of Loyola challenges the assumption that the scientific method is uniquely distinguishable from other ways of thinking and problem solving we regularly employ. In his example, he lays out how writing poetry involves some kind of alignment of words that conform to the requirements of the poem. Whether actively aware of the process or not, the poet is solving constraint satisfaction problems concerning formal requirements like meter and structure, linguistic problems like parts-of-speech and grammar, semantic problems concerning meaning, and pragmatic problems like referential extension and symbolism. Scientists do the same kinds of things in fitting a theory to data. And, in Blachowicz’s analysis, there is no special distinction between scientific method and other creative methods like the composition of poetry.

We can easily see how this extends to ideas like musical composition and, indeed, extends with even more constraints that range from formal through to possibly the neuropsychology of sound. I say “possibly” because there remains uncertainty on how much nurture versus nature is involved in the brain’s reaction to sounds and music.

In terms of a computational model of this creative process, if we presume that there is an objective function that governs possible fits to the given problem constraints, then we can clearly optimize towards a maximum fit. For many of the constraints there are, however, discrete parameterizations (which part of speech? which word?) that are not like curve fitting to scientific data. In fairness, discrete parameters occur there, too, especially in meta-analyses of broad theoretical possibilities (Quantum loop gravity vs. string theory? What will we tell the children?) The discrete parameterizations blow up the search space with their combinatorics, demonstrating on the one hand why we are so damned amazing, and on the other hand why a controlled randomization method like evolutionary epistemology’s blind search and selective retention gives us potential traction in the face of this curse of dimensionality.… Read the rest

Quantum Field Is-Oughts

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teleologySean Carroll’s Oxford lecture on Poetic Naturalism is worth watching (below). In many ways it just reiterates several common themes. First, it reinforces the is-ought barrier between values and observations about the natural world. It does so with particular depth, though, by identifying how coarse-grained theories at different levels of explanation can be equally compatible with quantum field theory. Second, and related, he shows how entropy is an emergent property of atomic theory and the interactions of quantum fields (that we think of as particles much of the time) and, importantly, that we can project the same notion of boundary conditions that result in entropy into the future resulting in a kind of effective teleology. That is, there can be some boundary conditions for the evolution of large-scale particle systems that form into configurations that we can label purposeful or purposeful-like. I still like the term “teleonomy” to describe this alternative notion, but the language largely doesn’t matter except as an educational and distinguishing tool against the semantic embeddings of old scholastic monks.

Finally, the poetry aspect resolves in value theories of the world. Many are compatible with descriptive theories, and our resolution of them is through opinion, reason, communications, and, yes, violence and war. There is no monopoly of policy theories, religious claims, or idealizations that hold sway. Instead we have interests and collective movements, and the above, all working together to define our moral frontiers.

 … Read the rest