Spurting into the Undiscovered Country

August 22, 2014August 23, 2014 Mark DavisLeave a comment

There was glop on the windows of the International Space Station. Outside. It was algae. How? Now that is unclear, but there is a recent tradition of arguing against abiogenesis here on Earth and arguing for ideas like panspermia where biological material keeps raining down on the planet, carried by comets and meteorites, trapped in crystal matrices. And there may be evidence that some of that may have happened, if only in the local system, between Mars and Earth.

Panspermia includes as a subset the idea of Directed Panspermia whereby some alien intelligence for some reason sends biological material out to deliberately seed worlds with living things. Why? Well, maybe it is a biological prerogative or an ethical stance. Maybe they feel compelled to do so because they are in some dystopian sci-fi narrative where their star is dying. One last gasping hope for alien kind!

Directed Panspermia as an explanation for life on Earth only sets back the problem of abiogenesis to other ancient suns and other times, and implicitly posits that some of the great known achievements of life on Earth like multicellular forms are less spectacularly improbable than the initial events of proto-life as we hypothesize it might have been. Still, great minds have spent great mental energy on the topic to the point that elaborate schemes involving solar sails have been proposed so that we may someday engage in Directed Panspermia as needed. I give you:

Mautner, M; Matloff, G. (1979). “Directed panspermia: A technical evaluation of seeding nearby solar systems”. J. British Interplanetary Soc. 32: 419.

So we take solar sails and bioengineered lifeforms in tiny capsules. The solar sails are large and thin. They carry the tiny capsules into stellar formations and slow down due to friction.… Read the rest

Just So Disruptive

July 10, 2014 Mark DavisLeave a comment

The “just so” story is a pejorative for cultural or physical traits that drive an evolutionary explanation. Things are “just so” when the explanation is unfalsifiable and theoretically fitted to current observations. Less controversial and pejorative is the essential character of evolutionary process where there is no doubt that genetic alternatives will mostly fail. The ones that survive this crucible are disruptive to the status quo, sure, but these disruptions tend to be geographically or sexually isolated from the main population anyway, so they are more an expansion than a disruption; little competition is tooth-and-claw, mostly species survive versus the environment, not one another.

Jill Lapore of Harvard subjects business theory to a similar crucible in the New Yorker, questioning Clayton Christensen’s classic argument in The Innovator’s Dilemma that businesses are unwilling to adapt to changing markets because they are making rational business decisions to maximize profits. After analyzing core business cases from Christensen’s books, Lapore concludes that the argument holds little water and that its predictions are both poor and inapplicable to other areas like journalism and college education.

Central to her critique is her analysis of the “just so” nature of disruptive innovation:

Christensen has compared the theory of disruptive innovation to a theory of nature: the theory of evolution. But among the many differences between disruption and evolution is that the advocates of disruption have an affinity for circular arguments. If an established company doesn’t disrupt, it will fail, and if it fails it must be because it didn’t disrupt. When a startup fails, that’s a success, since epidemic failure is a hallmark of disruptive innovation. (“Stop being afraid of failure and start embracing it,” the organizers of FailCon, an annual conference, implore, suggesting that, in the era of disruption, innovators face unprecedented challenges.

… Read the rest

Trees of Lives

June 23, 2014 Mark DavisLeave a comment

With a brief respite between vacationing in the canyons of Colorado and leaving tomorrow for Australia, I’ve open-sourced an eight-year-old computer program for converting one’s DNA sequences into an artistic rendering. The input to the program are the allelic patterns from standard DNA analysis services that use the Short Tandem Repeat Polymorphisms from forensic analysis, as well as poetry reflecting one’s ethnic heritage. The output is generative art: a tree that overlays the sequences with the poetry and a background rendered from the sequences.

Generative art is perhaps one of the greatest aesthetic achievements of the late 20th Century. Generative art is, fundamentally, a recognition that the core of our humanity can be understood and converted into meaningful aesthetic products–it is the parallel of effective procedures in cognitive science, and developed in lock-step with the constructive efforts to reproduce and simulate human cognition.

To use Tree of Lives, install Java 1.8, unzip the package, and edit the supplied markconfig.txt to enter in your STRs and the allele variant numbers in sequence per line 15 of the configuration file. Lines 16+ are for lines of poetry that will be rendered on the limbs of the tree. Other configuration parameters can be discerned by examining com.treeoflives.CTreeConfig.java, and involve colors, paths, etc. Execute the program with:

java -cp treeoflives.jar:iText-4.2.0-com.itextpdf.jar com.treeoflives.CAlleleRenderer markconfig.txt

… Read the rest

Humbly Evolving in a Non-Simulated Universe

February 18, 2014February 18, 2014 Mark DavisLeave a comment

The New York Times seems to be catching up to me, first with an interview of Alvin Plantinga by Gary Cutting in The Stone on February 9th, and then with notes on Bostrom’s Simulation Hypothesis in the Sunday Times.

I didn’t see anything new in the Plantinga interview, but reviewed my previous argument that adaptive fidelity combined with adaptive plasticity must raise the probability of rationality at a rate that is much greater than the contributions that would be “deceptive” or even mildly cognitively or perceptually biased. Worth reading is Branden Fitelsen and Eliot Sober’s very detailed analysis of Plantinga’s Evolutionary Argument Against Naturalism (EAAN), here. Most interesting are the beginning paragraphs of Section 3, which I reproduce here because it is a critical addition that should surprise no one but often does:

Although Plantinga’s arguments don’t work, he has raised a question that needs to be answered by people who believe evolutionary theory and who also believe that this theory says that our cognitive abilities are in various ways imperfect. Evolutionary theory does say that a device that is reliable in the environment in which it evolved may be highly unreliable when used in a novel environment. It is perfectly possible that our mental machinery should work well on simple perceptual tasks, but be much less reliable when applied to theoretical matters. We hasten to add that this is possible, not inevitable. It may be that the cognitive procedures that work well in one domain also work well in another; Modus Ponens may be useful for avoiding tigers and for doing quantum physics.

Anyhow, if evolutionary theory does say that our ability to theorize about the world is apt to be rather unreliable, how are evolutionists to apply this point to their own theoretical beliefs, including their belief in evolution?

… Read the rest

Contingency and Irreducibility

September 11, 2013September 11, 2013 Mark DavisLeave a comment

Thomas Nagel returns to defend his doubt concerning the completeness—if not the efficacy—of materialism in the explanation of mental phenomena in the New York Times. He quickly lays out the possibilities:

Consciousness is an easy product of neurophysiological processes
Consciousness is an illusion
Consciousness is a fluke side-effect of other processes
Consciousness is a divine property supervened on the physical world

Nagel arrives at a conclusion that all four are incorrect and that a naturalistic explanation is possible that isn’t “merely” (1), but that is at least (1), yet something more. I previously commented on the argument, here, but the refinement of the specifications requires a more targeted response.

Let’s call Nagel’s new perspective Theory 1+ for simplicity. What form might 1+ take on? For Nagel, the notion seems to be a combination of Chalmers-style qualia combined with a deep appreciation for the contingencies that factor into the personal evolution of individual consciousness. The latter is certainly redundant in that individuality must be absolutely tied to personal experiences and narratives.

We might be able to get some traction on this concept by looking to biological evolution, though “ontogeny recapitulates phylogeny” is about as close as we can get to the topic because any kind of evolutionary psychology must be looking for patterns that reinforce the interpretation of basic aspects of cognitive evolution (sex, reproduction, etc.) rather than explore the more numinous aspects of conscious development. So we might instead look for parallel theories that focus on the uniqueness of outcomes, that reify the temporal evolution without reference to controlling biology, and we get to ideas like uncomputability as a backstop. More specifically, we can explore ideas like computational irreducibility to support the development of Nagel’s new theory; insofar as the environment lapses towards weak predictability, a consciousness that self-observes, regulates, and builds many complex models and metamodels is superior to those that do not.… Read the rest

Red Queens of Hearts

August 4, 2013 Mark DavisLeave a comment

An incomplete area of study in philosophy and science is the hows and whys of social cooperation. We can easily assume that social organisms gain benefits in terms of the propagation of genes by speculating about the consequences of social interactions versus individual ones, but translating that speculation into deep insights has remained a continuing research program. The consequences couldn’t be more significant because we immediately gain traction on the Naturalistic Fallacy and build a bridge towards a clearer understanding of human motivation in arguing for a type of Moral Naturalism that embodies much of the best we know and hope for from human history.

So worth tracking are continued efforts to understand how competition can be outdone by cooperation in the most elementary and mathematical sense. The superlatively named Freeman Dyson (who doesn’t want to be a free man?) cast a cloud of doubt on the ability of cooperation to be a working strategy when he and colleague William Press analyzed the payoff matrixes of iterated prisoner’s dilemma games and discovered a class of play strategies called “Zero-Determinant” strategies that always pay-off regardless of the opponent’s strategies. Hence, the concern that there is a large corner in the adaptive topology where strong-arming always wins. And evolutionary search must seek out that corner and winners must accumulate there, thus ruling out cooperation as a prominent feature of evolutionary success.

But that can’t reflect the reality we think we see, where cooperation in primates and other eusocial organisms seems to be the precursor to the kinds of virtues that are reflected in moral, religious, and ethical traditions. So what might be missing in this analysis? Christophe Adami and Arend Hintze at Michigan State may have some of the answers in their paper, Evolutionary instability of zero-determinant strategies demonstrates that winning is not everything.… Read the rest

Chinese Feudal Wasps

February 27, 2013 Mark DavisLeave a comment

In Fukuyama’s The Origins of Political Order, the author points out that Chinese feudalism was not at all like European feudalism. In the latter, vassals were often unrelated to lords and the relationship between them was consensual and renewed annually. Only later did patriarchal lineages become important in preserving the line of descent among the lords. But that was not the case in China where extensive networks of blood relations dominated the lord-vassal relationship; the feudalism was more like tribalism and clans than the European model, but with Confucianism layered on top.

So when E.O. Wilson, still intellectually agile in his twilight years, describes the divide between kin selection and multi-level selection in the New York Times, we start to see a similar pattern of explanation for both models at far more basic level than just in the happenstances of Chinese versus European cultures. Kin selection predicts that genetic co-representation can lead an individual to self-sacrifice in an evolutionary sense (from loss of breeding possibilities in Hymenoptera like bees and ants, through to sacrificial behavior like standing watch against predators and thus becoming a target, too). This is the traditional explanation and the one that fits well for the Chinese model. But we also have the multi-level selection model that posits that selection operates at the group level, too. In kin selection there is no good explanation for the European feudal tradition unless the vassals are inbred with their lords, which seems unlikely in such a large, diverse cohort. Consolidating power among the lords and intermarrying practices possibly did result in inbreeding depression later on, but the overall model was one based on social ties that were not based on genetic familiarity.… Read the rest

Bats and Belfries

November 21, 2012November 21, 2012 Mark DavisLeave a comment

Thomas Nagel proposes a radical form of skepticism in his new book, Minds and Cosmos, continuing his trajectory through subjective experience and moral realism first began with bats zigging and zagging among the homunculi of dualism reimagined in the form of qualia. The skepticism involves disputing materialistic explanations and proposing, instead, that teleological ones of an unspecified form will likely apply, for how else could his subtitle that paints the “Neo-Darwinian Concept of Nature” as likely false hold true?

Nagel is searching for a non-religious explanation, of course, because just enervating nature through fiat is hardly an explanation at all; any sort of powerful, non-human entelechy could be gaming us and the universe in a non-coherent fashion. But what parameters might support his argument? Since he apparently requires a “significant likelihood” argument to hold sway in support of the origins of life, for instance, we might imagine what kind of thinking could result in highly likely outcomes that begin with inanimate matter and lead to goal-directed behavior while supporting a significant likelihood of that outcome. The parameters might involve the conscious coordination of the events leading towards the emergence of goal-directed life, thus presupposing a consciousness that is not our own. We are back then to our non-human entelechy looming like an alien or like a strange creator deity (which is not desirable to Nagel). We might also consider the possibility that there are properties to the universe itself that result in self-organization and that either we don’t yet know or that we are only beginning to understand. Elliot Sober’s critique suggests that the 2nd Law of Thermodynamics results in what I might call “patterned” behavior while not becoming “goal-directed” per se.… Read the rest

Evolutionary Art and Architecture

September 10, 2012 Mark DavisLeave a comment

With every great scientific advance there has been a coordinated series of changes in the Zeitgeist. Evolutionary theory has impacted everything from sociology through to literature, but there are some very sophisticated efforts in the arts that deserve more attention.

John Frazer’s Evolutionary Architecture is a great example. Now available as downloadable PDFs since it is out-of-print, Evolutionary Architecture asks the question, without fully answering it (how could it?), about how evolution-like processes can contribute to the design of structures:

And then there is William Latham’s evolutionary art that explores form derived from generative functions dating to 1989:

And the art extends to functional virtual creatures:

… Read the rest

Multitudes and the Mathematics of the Individual

August 28, 2012August 29, 2012 Mark DavisLeave a comment

The notion that there is a path from reciprocal altruism to big brains and advanced cognitive capabilities leads us to ask whether we can create “effective” procedures that shed additional light on the suppositions that are involved, and their consequences. Any skepticism about some virulent kind of scientism then gets whisked away by the imposition of a procedure combined with an earnest interest in careful evaluation of the outcomes. That may not be enough, but it is at least a start.

I turn back to Marcus Hutter, Solomonoff, and Chaitin-Kolmogorov at this point. I’ll be primarily referencing Hutter’s Universal Algorithmic Intelligence (A Top-Down Approach) in what follows. And what follows is an attempt to break down how three separate factors related to intelligence can be explained through mathematical modeling. The first and the second are covered in Hutter’s paper, but the third may represent a new contribution, though perhaps an obvious one without the detail work that is needed to provide good support.

First, then, we start with a core requirement of any goal-seeking mechanism: the ability to predict patterns in the environment external to the mechanism. This is well-covered since Solomonoff in the 60s who formalized the implicit arguments in Kolmogorov algorithmic information theory (AIT), and that were subsequently expanded on by Greg Chaitin. In essence, given a range of possible models represented by bit sequences of computational states, the shortest sequence that predicts the observed data is also the optimal predictor for any future data also produced by the underlying generator function. The shortest sequence is not computable, but we can keep searching for shorter programs and come up with unique optimizations for specific data landscapes. And that should sound familiar because it recapitulates Occam’s Razor and, in a subset of cases, Epicurus’ Principle of Multiple Explanations.… Read the rest